NDB ID: AR0035


Title:CRYSTAL STRUCTURE OF A BULGED RNA FROM THE SL2 STEM-LOOP OF THE HIV-1 PSI-RNA
Molecular Description:5'-R(GpGpCpGpApCp(5BU)pG)-3'
Structural Features:A DOUBLE HELIX, BULGE, FLIPPED-OUT BASE
Nucleic Acid Sequence:
ChainsA,C:G G C G A C (5BU) G
ChainsB,D:C A G U A C G (5IC) C
Primary Citation:Xiong, Y., Sudarsanakumar, C., Deng, J., Pan, M., Sundaralingam, M.
Crystal Structure of a Bulged RNA from the SL2 Stem-loop of the HIV-1 psi-RNA
To be Published
Experimental Information:X-RAY DIFFRACTION
Space Group: 41   21   2
Cell Constants:
a = 45.800b = 45.800c = 89.650(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 20.3 for 19558 reflections in the resolution range 20. to 1.7 Ångstroms with Fobs > 2. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1JZV




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