NDB ID: AR0064


Title:MOLECULAR RECOGNITION OF RNA BY NEOMYCIN AND A RESTRICTED NEOMYCIN DERIVATIVE
Molecular Description:5'-R(GpUpGpGpUpGpApApGpUpCpGpCpGpG)-3'
Structural Features:A DOUBLE HELIX, BULGES, OVERHANGING BASES, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainsA,C,E,G:G U G G U G A A G U C G C G G
ChainsB,D,F,H:C G C G U C A C A C C A C C
Primary Citation:Zhao, F., Zhao, Q., Blount, K.F., Han, Q., Tor, Y., Hermann, T.
Molecular recognition of RNA by neomycin and a restricted neomycin derivative
Angew.Chem.Int.Ed.Engl. , 44, pp. 5329 - 5334, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   1
Cell Constants:
a = 32.650b = 153.200c = 32.740(Ångstroms)
= 90.00 = 90.10 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 25.1 for 15264 reflections in the resolution range 8.0 to 2.15 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2
Enlarge Biological Assembly 3
Enlarge Biological Assembly 4



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)1234

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1ZX7

PubMed: 16037995




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