NDB ID: AR0093


Title:X-RAY STRUCTURE OF A PSEUDOURIDINE-CONTAINING YEAST SPLICEOSOMAL U2 SNRNA-INTRON BRANCH SITE DUPLEX BOUND TO IODIDE IONS
Molecular Description:5'-R(GpCpGpCpGp(PSU)pApGpUpApGpC)-3'
Structural Features:A DOUBLE HELIX, bulge, OVERHANGING BASES
Nucleic Acid Sequence:
ChainA:G C G C G (PSU) A G U A G C
ChainB:C G C U A C U A A C G C G
Primary Citation:Lin, Y., Kielkopf, C.L.
X-ray structures of U2 snRNA-branchpoint duplexes containing conserved pseudouridines.
Biochemistry , 47, pp. 5503 - 5514, 2008.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 68.30b = 40.79c = 32.55(Ångstroms)
= 90.00 = 94.93 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 20.1 for 11922 reflections in the resolution range 20.0 to 1.57 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 3CGP

PubMed: 18435545




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