NDB ID: BD0004


Title:THE STRUCTURE OF MOST STUDIED DNA FRAGMENT CHANGES UNDER THE INFLUENCE OF IONS: A NEW PACKING OF D(CGCGAATTCGCG)
Molecular Description:5'-D(CpGpCpGpApApTpTpCpGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DC) (DG) (DA) (DA) (DT) (DT) (DC) (DG) (DC) (DG)
Primary Citation:Liu, J., Malinina, L., Huynh-Dinh, T., Subirana, J.A.
The structure of the most studied DNA fragment changes under the influence of ions: a new packing of d(CGCGAATTCGCG).
FEBS Lett. , 438, pp. 211 - 214, 1998.
Experimental Information:X-RAY DIFFRACTION
Space Group: 3
Cell Constants:
a = 41.960b = 41.960c = 101.400(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:PROTAMINE, CaCl2, MPD, CACODYLIC ACID
Reservoir:MPD
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 19.3 for 1089 reflections in the resolution range 8.0 to 3.0 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 426D

PubMed: 9827547




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