NDB ID: BD0014


Title:CALCIUM FORM OF D(CGCGAATTCGCG)2
Molecular Description:5'-D(CpGpCpGpApApTpTpCpGpCpG)-3'
Structural Features:B DOUBLE HELIX, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DC) (DG) (DA) (DA) (DT) (DT) (DC) (DG) (DC) (DG)
Primary Citation:Liu, J., Subirana, J.A.
Structure of d(CGCGAATTCGCG) in the presence of Ca(2+) ions.
J.Biol.Chem. , 274, pp. 24749 - 24752, 1999.
Experimental Information:X-RAY DIFFRACTION
Space Group: 3
Cell Constants:
a = 41.117b = 41.117c = 99.912(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:CaCl2, MPD, CACODYLIC ACID
Reservoir:CaCl2, MPD, CACODYLIC ACID
Refinement:The structure was refined using the SHELXL-97 program. The R value is 21.72 for 11005 reflections in the resolution range 8.00 to 1.45 Ångstroms with Fobs > 0.0 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 463D

PubMed: 10455145




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