NDB ID: BD0019


Title:CALCIUM FORM OF THE B-DNA DODECAMER GGCGAATTCGCG
Molecular Description:5'-D(GpGpCpGpApApTpTpCpGpCpG)-3'
Structural Features:B DOUBLE HELIX, OVERHANGING BASES
Nucleic Acid Sequence:
ChainsA, B: (DG) (DG) (DC) (DG) (DA) (DA) (DT) (DT) (DC) (DG) (DC) (DG)
Primary Citation:Minasov, G., Tereshko, V., Egli, M.
Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing.
J.Mol.Biol. , 291, pp. 83 - 99, 1999.
Experimental Information:X-RAY DIFFRACTION
Space Group: 3
Cell Constants:
a = 41.990b = 41.990c = 99.550(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:SODIUM CACODYLATE, CaCl2
Reservoir:MPD
Refinement:The structure was refined using the CNS program. The R value is 19.4 for 6228 reflections in the resolution range 20.0 to 1.70 Ångstroms with I > 0.0 sigma(I).

Biological Unit 1
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Asymmetric Unit
Crystal Packing
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 477D

PubMed: 10438608




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