NDB ID: BD0020


Title:CRYSTAL STRUCTURE OF THE B-DNA DODECAMER 5'-D(CGCGAA(TAF)TCGCG), WHERE TAF IS 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE
Molecular Description:5'-D(CpGpCpGpApAp(TAF)pTpCpGpCpG)-3'
Structural Features:B DOUBLE HELIX, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DC) (DG) (DA) (DA) (TAF) (DT) (DC) (DG) (DC) (DG)
Primary Citation:Minasov, G., Tereshko, V., Egli, M.
Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing.
J.Mol.Biol. , 291, pp. 83 - 99, 1999.
Experimental Information:X-RAY DIFFRACTION
Space Group: 3
Cell Constants:
a = 42.31b = 42.31c = 99.68(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 19.7 for 3264 reflections in the resolution range 8.0 to 2.20 Ångstroms with I > 0.0 sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 478D

PubMed: 10438608




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