NDB ID: BD0021


Title:DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE
Molecular Description:5'-D(CpCpApGp(G47)pCpCpTpGpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B, C, D: (DC) (DC) (DA) (DG) (G47) (DC) (DC) (DT) (DG) (DG)
Primary Citation:van Aalten, D.M., Erlanson, D.A., Verdine, G.L., Joshua-Tor, L.
A structural snapshot of base-pair opening in DNA.
Proc.Natl.Acad.Sci.USA , 96, pp. 11809 - 11814, 1999.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 34.435b = 43.180c = 72.412(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:CaCl2, NaCl, SPERMINE, SODIUM CACODYLATE, MPD
Reservoir:MPD
Refinement:The structure was refined using the CNS program. The R value is 20.3 for 15525 reflections in the resolution range 13.0 to 1.55 Ångstroms with I > 0.0 sigma(I).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing

Biological Units
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)12

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1CW9

PubMed: 10518532




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