NDB ID: BD0022


Title:BASE-PAIRING SHIFT IN A DODECAMER CONTAINING A (CA)N TRACT
Molecular Description:5'-D(ApCpCpGpGpCpGpCpCpApCpA)-3'
5'-D(TpGpTpGpGpCpGpCpCpGpGpT)-3'
Structural Features:B DOUBLE HELIX, SHIFTED BASE PAIRS
Nucleic Acid Sequence:
ChainA:(DA) (DC) (DC) (DG) (DG) (DC) (DG) (DC) (DC) (DA) (DC) (DA)
ChainB:(DT) (DG) (DT) (DG) (DG) (DC) (DG) (DC) (DC) (DG) (DG) (DT)
Primary Citation:Timsit, Y., Vilbois, E., Moras, D.
Base-pairing shift in the major groove of (CA)n tracts by B-DNA crystal structures.
Nature , 354, pp. 167 - 170, 1991.
Experimental Information:X-RAY DIFFRACTION
Space Group: 3
Cell Constants:
a = 65.900b = 65.900c = 47.100(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the NUCLSQ program. The R value is 16.1 for 1603 reflections in the resolution range 15.0 to 2.6 Ångstroms with I > 1.0 sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1QP5

PubMed: 1944598




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