NDB ID: BD0043


Title:MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG): 5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA
Molecular Description:5'-D(CpGpCpGpApApTp(UFR)pCpGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DC) (DG) (DA) (DA) (DT) (UFR) (DC) (DG) (DC) (DG)
Primary Citation:Tsunoda, M., Karino, N., Ueno, Y., Matsuda, A., Takenaka, A.
Crystallization and preliminary X-ray analysis of a DNA dodecamer containing 2'-deoxy-5-formyluridine; what is the role of magnesium cation in crystallization of Dickerson-type DNA dodecamers?
Acta Crystallogr.,Sect.D , 57, pp. 345 - 348, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.800b = 39.300c = 65.000(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.0 program. The R value is 21.0 for reflections in the resolution range 50. to 1.57 Ångstroms with Fobs > 0. sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1G75

PubMed: 11173500




ndbadmin@ndbserver.rutgers.edu
©1995-2013 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey