NDB ID: BD0064


Title:CRYSTAL STRUCTURE OF NICKEL(II)-D(GGCGCC)2
Molecular Description:5'-D(GpGpCpGpCpC)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B,C,D,E:(DG) (DG) (DC) (DG) (DC) (DC)
Primary Citation:Labiuk, S.L., Delbaere, L.T., Lee, J.S.
Cobalt(II), nickel(II) and zinc(II) do not bind to intra-helical N(7) guanine positions in the B-form crystal structure of d(GGCGCC)
J.Biol.Inorg.Chem. , 8, pp. 715 - 720, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 41   21   2
Cell Constants:
a = 68.99b = 68.99c = 56.18(Ångstroms)
= 90. = 90. = 90.(degrees)
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 22.3 for 2706 reflections in the resolution range 15. to 2.90 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2
Enlarge Biological Assembly 3



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)123

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1P25

PubMed: 14505075




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