NDB ID: BD0072


Title:X-RAY ANALYSES OF OLIGONUCLEOTIDES CONTAINING 5-FORMYLCYTOSINE, SUGGESTING A STRUCTURAL REASON FOR CODON-ANTICODON RECOGNITION OF MITOCHONDRIAL TRNA-MET; PART 1, D(CGCGAATT(F5C)GCG)
Molecular Description:5'-D(CpGpCpGpApApTpTp(5FC)pGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DC) (DG) (DA) (DA) (DT) (DT) (5FC) (DG) (DC) (DG)
Primary Citation:Kimura, K., Ono, A., Watanabe, K., Takenaka, A.
X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggest a structural reason for the codon-anticodon recognition of mitochondrial tRNA-Met
To be Published
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.100b = 41.600c = 65.500(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS 1.1 program. The R value is 22.1 for 8479 reflections in the resolution range 9.0 to 1.65 Ångstroms with Fobs > 3.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1VE8




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