NDB ID: BD0075


Title:CRYSTAL STRUCTURE OF [D(CGCGAA(Z3DU)(Z3DU)CGCG)]2, Z3DU:5-(3-AMINOPROPYL)-2'-DEOXYURIDINE, IN PRESENCE OF THALLIUM I.
Molecular Description:5'-D(CpGpCpGpApAp(ZDU)p(ZDU)pCpGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DC) (DG) (DA) (DA) (ZDU) (ZDU) (DC) (DG) (DC) (DG)
Primary Citation:Moulaei, T., Maehigashi, T., Lountos, G.T., Komeda, S., Watkins, D., Stone, M.P., Marky, L.A., Li, J.S., Gold, B., Williams, L.D.
Structure of B-DNA with cations tethered in the major groove.
Biochemistry , 44, pp. 7458 - 7468, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 24.994b = 41.057c = 66.339(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 19.8 for 7355 reflections in the resolution range 34.910 to 1.600 Ångstroms with Fobs > 1.01 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1Z5T

PubMed: 15895989




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