NDB ID: BD0078


Title:THE STRUCTURE OF D(GGCCAATTGG) COMPLEXED WITH NETROPSIN
Molecular Description:5'-D(GpGpCpCpApApTpTpGpG)-3'
Structural Features:B DOUBLE HELIX, BASE TRIPLET
Nucleic Acid Sequence:
ChainsA, B: (DG) (DG) (DC) (DC) (DA) (DA) (DT) (DT) (DG) (DG)
Primary Citation:Van Hecke, K., Nam, P.C., Nguyen, M.T., Van Meervelt, L.
Netropsin interactions in the minor groove of d(GGCCAATTGG) studied by a combination of resolution enhancement and ab initio calculations.
Febs J. , 272, pp. 3531 - 3541, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 26.025b = 38.559c = 53.203(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:potassium cacodylate, MPD, magnesium chloride, spermine
Reservoir:MPD, magnesium chloride
Refinement:The structure was refined using the REFMAC 5.1.24 program. The R value is 19.97 for 5379 reflections in the resolution range 9.6 to 1.75 Ångstroms .

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1Z8V

PubMed: 16008554




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