NDB ID: BD0090


Title:5'-D(*GP*CP*AP*GP*AP*CP*GP*TP*CP*TP*GP*C)-3' METHIONINE REPRESSOR BINDING SITE
Molecular Description:5'-D(GpCpApGpApCpGpTpCpTpGpC)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B,C,D,E,F:(DG) (DC) (DA) (DG) (DA) (DC) (DG) (DT) (DC) (DT) (DG) (DC)
Primary Citation:Locasale, J.W., Napoli, A.A., Chen, S., Berman, H.M., Lawson, C.L.
Signatures of protein-DNA recognition in free DNA binding sites.
J.Mol.Biol. , 386, pp. 1054 - 1065, 2009.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 39.980b = 40.346c = 40.255(Ångstroms)
= 82.15 = 69.13 = 81.44(degrees)
Refinement:The structure was refined using the REFMAC 5.1.24 program. The R value is 23.5 for 7684 reflections in the resolution range 39.840 to 2.500 Ångstroms with Fobs > 0.00 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2
Enlarge Biological Assembly 3



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)123

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 2B1D

PubMed: 19244617




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