NDB ID: BDH071


Title:STRUCTURAL COMPARISON BETWEEN THE D(CTAG) SEQUENCE IN OLIGONUCLEOTIDES AND TRP AND MET REPRESSOR-OPERATOR COMPLEXES
Molecular Description:5'-D(CpGpCpTpApGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B, C, D, E, F: (DC) (DG) (DC) (DT) (DA) (DG) (DC) (DG)
Primary Citation:Urpi, L., Tereshko, V., Malinina, L., Huynh-Dinh, T., Subirana, J.A.
Structural comparison between the d(CTAG) sequence in oligonucleotides and trp and met repressor-operator complexes.
Nat.Struct.Biol. , 3, pp. 325 - 328, 1996.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 24.770b = 41.520c = 115.890(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, MgCl2, Spermine HCl
Reservoir:WATER, MPD
Refinement:The structure was refined using the X-PLOR program. The R value is 18.2 for 3309 reflections in the resolution range 8.000 to 2.470 Ångstroms with Fobs > 2.000 sigma(Fobs).

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)123

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 250D

PubMed: 8599757




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