NDB ID: BDJ008


Title:HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER
Molecular Description:5'-D(CpCpApApGpApTpTpGpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainA: (DC) (DC) (DA) (DA) (DG) (DA) (DT) (DT) (DG) (DG)
Primary Citation:Prive, G.G., Yanagi, K., Dickerson, R.E.
Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G.
J.Mol.Biol. , 217, pp. 177 - 199, 1991.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 32.520b = 26.170c = 34.300(Ångstroms)
= 90.00 = 118.90 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, MgCl2
Reservoir:WATER, MPD
Refinement:The structure was refined using the NUCLSQ program. The R value is 16.4 for 4016 reflections in the resolution range 8.000 to 1.300 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 3DNB

PubMed: 1988677




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