NDB ID: BDJ069


Title:CRYSTAL STRUCTURE OF THE B-DNA DECAMER D(CGCAATTGCG)2; SEQUENCE-DEPENDENT CROSSED HELIX PACKING
Molecular Description:5'-D(CpGpCpApApTpTpGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DC) (DA) (DA) (DT) (DT) (DG) (DC) (DG)
Primary Citation:Wood, A.A., Nunn, C.M., Trent, J.O., Neidle, S.
Sequence-dependent crossed helix packing in the crystal structure of a B-DNA decamer yields a detailed model for the Holliday junction.
J.Mol.Biol. , 269, pp. 827 - 841, 1997.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 63.630b = 24.700c = 38.290(Ångstroms)
= 90.00 = 110.27 = 90.00(degrees)
Refinement:The structure was refined using the X-PLOR program. The R value is 17.7 for 2095 reflections in the resolution range 8.000 to 2.300 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 252D

PubMed: 9223644




ndbadmin@ndbserver.rutgers.edu
©1995-2013 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey