NDB ID: BDL001


Title:STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICS
Molecular Description:5'-D(CpGpCpGpApApTpTpCpGpCpG)-3'
290 K
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DC) (DG) (DA) (DA) (DT) (DT) (DC) (DG) (DC) (DG)
Primary Citation:Drew, H.R., Wing, R.M., Takano, T., Broka, C., Tanaka, S., Itakura, K., Dickerson, R.E.
Structure of a B-DNA dodecamer: conformation and dynamics.
Proc.Natl.Acad.Sci.USA , 78, pp. 2179 - 2183, 1981.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 24.870b = 40.390c = 66.200(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, Mg ACETATE, Spermine HCl
Reservoir:WATER, MPD
Refinement:The structure was refined using the JACK-LEVITT program. The R value is 17.8 for 2725 reflections in the resolution range 8.000 to 1.900 Ångstroms with I > 2.000 sigma(I).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1BNA

PubMed: 6941276




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