NDB ID: BDL006


Title:THE STRUCTURE OF AN OLIGO(DA).OLIGO(DT) TRACT AND ITS BIOLOGICAL IMPLICATIONS
Molecular Description:5'-D(CpGpCpApApApApApApGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainA: (DC) (DG) (DC) (DA) (DA) (DA) (DA) (DA) (DA) (DG) (DC) (DG)
ChainB: (DC) (DG) (DC) (DT) (DT) (DT) (DT) (DT) (DT) (DG) (DC) (DG)
Primary Citation:Nelson, H.C., Finch, J.T., Luisi, B.F., Klug, A.
The structure of an oligo(dA).oligo(dT) tract and its biological implications.
Nature , 330, pp. 221 - 226, 1987.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.400b = 40.700c = 65.800(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, Mg ACETATE, Spermine HCl
Reservoir:WATER, MPD
Refinement:The structure was refined using the NUCLSQ program. The R value is 20 for 2003 reflections in the resolution range 8.000 to 2.500 Ångstroms with I > 0.500 sigma(I).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1D98

PubMed: 3670410




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