NDB ID: BDL007


Title:STRUCTURE OF AN ALTERNATING-B DNA HELIX AND ITS RELATIONSHIP TO A-TRACT DNA
Molecular Description:5'-D(CpGpCpApTpApTpApTpGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DC) (DA) (DT) (DA) (DT) (DA) (DT) (DG) (DC) (DG)
Primary Citation:Yoon, C., Prive, G.G., Goodsell, D.S., Dickerson, R.E.
Structure of an alternating-B DNA helix and its relationship to A-tract DNA.
Proc.Natl.Acad.Sci.USA , 85, pp. 6332 - 6336, 1988.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 23.540b = 38.860c = 66.570(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, Mg ACETATE, SPERMINE
Reservoir:WATER, MPD
Refinement:The structure was refined using the X-PLOR program. The R value is 18.9 for 1915 reflections in the resolution range 8.000 to 2.200 Ångstroms with Fobs > 0.500 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1DN9

PubMed: 3413099




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