NDB ID: BDL021


Title:MOLECULAR STRUCTURE OF NICKED DNA. MODEL A4
Molecular Description:5'-D(CpGpCpGpApApApApCpGpCpG)-3'/ 5'-D(
CpGpCpGpTpT)-3'+ 5'-D(TpTpCpGpCpG)-3'
MODEL A4
Structural Features:B DOUBLE HELIX, NICKED
Nucleic Acid Sequence:
ChainA: C G C G A A A A C G C G
ChainB: C G C G T T
ChainC: T T C G C G
Primary Citation:Aymani, J., Coll, M., Van Der Marel, G.A., Van Boom, J.H., Wang, A.H.-J., Rich, A.
Molecular Structure of Nicked DNA: A Substrate for DNA Repair Enzymes
Proc.Natl.Acad.Sci.USA , 87, pp. 2526 - 2530, 1990.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.990b = 44.030c = 66.620(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, MgCl2, Na Cacodylate, Spermine HCl
Reservoir:WATER, MPD
Refinement:The structure was refined using the NUCLSQ program. The R value is 18.2 for 553 reflections in the resolution of 3.000 with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.Z))

Asymmetric Unit coordinates (cif format, Unix compressed(.Z))

Biological Unit coordinates (pdb format)

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification




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