NDB ID: BDL022


Title:CRYSTAL STRUCTURE AND SEQUENCE-DEPENDENT CONFORMATION OF THE A.G MIS-PAIRED OLIGONUCLEOTIDE D(CGCAAGCTGGCG)
Molecular Description:5'-D(CpGpCpApApGpCpTpGpGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DC) (DA) (DA) (DG) (DC) (DT) (DG) (DG) (DC) (DG)
Primary Citation:Webster, G.D., Sanderson, M.R., Skelly, J.V., Neidle, S., Swann, P.F., Li, B.F., Tickle, I.J.
Crystal structure and sequence-dependent conformation of the A.G mispaired oligonucleotide d(CGCAAGCTGGCG).
Proc.Natl.Acad.Sci.USA , 87, pp. 6693 - 6697, 1990.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.290b = 41.780c = 64.760(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, MgCl2, SPERMINE
Reservoir:WATER, MPD
Refinement:The structure was refined using the NUCLSQ program. The R value is 19.3 for 1710 reflections in the resolution of 2.500 with Fobs > 3.000 sigma(Fobs).

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
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Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1DNM

PubMed: 2395870




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