NDB ID: BDL032


Title:MOLECULAR STRUCTURE OF NICKED DNA. MODEL T4
Molecular Description:5'-D(CpGpCpGpApApApApCpGpCpG)-3'/ 5'-D(
CpGpCpGpTpT)-3'+ 5'- D(TpTpCpGpCpG)-3'
MODEL T4
Structural Features:B DOUBLE HELIX, NICKED
Nucleic Acid Sequence:
ChainA:Click here for sequence.
ChainB:Click here for sequence.
ChainC:Click here for sequence.
Primary Citation:Aymami, J., Coll, M., van der Marel, G.A., van Boom, J.H., Wang, A.H., Rich, A.
Molecular structure of nicked DNA: a substrate for DNA repair enzymes.
Proc.Natl.Acad.Sci.USA , 87, pp. 2526 - 2530, 1990.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.990b = 44.030c = 66.620(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, MgCl2, Na Cacodylate, Spermine HCl
Reservoir:WATER, MPD
Refinement:The structure was refined using the NUCLSQ program. The R value is 18.6 for 553 reflections in the resolution of 3.000 with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1NDN

PubMed: 2320572




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