NDB ID: BDL059


Title:X-RAY STRUCTURES OF THE B-DNA DODECAMER D(CGCGTTAACGCG) WITH AN INVERTED CENTRAL TETRANUCLEOTIDE AND ITS NETROPSIN COMPLEX
Molecular Description:5'-D(CpGpCpGpTpTpApApCpGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DC) (DG) (DT) (DT) (DA) (DA) (DC) (DG) (DC) (DG)
Primary Citation:Balendiran, K., Rao, S.T., Sekharudu, C.Y., Zon, G., Sundaralingam, M.
X-ray structures of the B-DNA dodecamer d(CGCGTTAACGCG) with an inverted central tetranucleotide and its netropsin complex.
Acta Crystallogr.,Sect.D , 51, pp. 190 - 198, 1995.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.700b = 40.500c = 67.000(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION
Drop:WATER, MPD, MgCl2, Spermine HCl
Reservoir:WATER, MPD
Refinement:The structure was refined using the X-PLOR program. The R value is 14.8 for 1522 reflections in the resolution range 6.000 to 2.300 Ångstroms with Fobs > 2.000 sigma(Fobs).

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 194D

PubMed: 15299320




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