NDB ID: BDLB33


Title:CONFORMATION OF THE GUANINE.8-OXOADENINE BASE PAIRS IN THE CRYSTAL STRUCTURE OF D(CGCGAATT(O8A)GCG)
Molecular Description:5'-D(CpGpCpGpApApTpTp(A38)pGpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DC) (DG) (DA) (DA) (DT) (DT) (A38) (DG) (DC) (DG)
Primary Citation:Leonard, G.A., Guy, A., Brown, T., Teoule, R., Hunter, W.N.
Conformation of guanine-8-oxoadenine base pairs in the crystal structure of d(CGCGAATT(O8A)GCG).
Biochemistry , 31, pp. 8415 - 8420, 1992.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.480b = 41.840c = 64.910(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:WATER, MPD, Na Cacodylate, Mg ACETATE, SPERMINE
Refinement:The structure was refined using the NUCLSQ program. The R value is 15.1 for 1119 reflections in the resolution range 7.000 to 2.800 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
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Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1D75

PubMed: 1390625




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