NDB ID: BDLB58


Title:THE STRUCTURE OF A NEW CRYSTAL FORM OF A DNA DODECAMER CONTAINING T.(O6ME)G BASE PAIRS
Molecular Description:5'-D(CpGpTpGpApApTpTpCp(6OG)pCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DG) (DT) (DG) (DA) (DA) (DT) (DT) (DC) (6OG) (DC) (DG)
Primary Citation:Vojtechovsky, J., Eaton, M.D., Gaffney, B., Jones, R., Berman, H.M.
Structure of a new crystal form of a DNA dodecamer containing T.(O6Me)G base pairs.
Biochemistry , 34, pp. 16632 - 16640, 1995.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 22.120b = 38.810c = 64.480(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:WATER, MPD, MgCl2, Na Cacodylate
Reservoir:WATER, MPD
Refinement:The structure was refined using the X-PLOR program. The R value is 16.7 for 2040 reflections in the resolution range 10.000 to 2.250 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 218D

PubMed: 8527436




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