NDB ID: DD0002


Title:D(GGCCAATTGG) COMPLEXED WITH DAPI
Molecular Description:5'-D(GpGpCpCpApApTpTpGpG)-3'
DAPI
Structural Features:B DOUBLE HELIX, OVERHANGING BASES, FLIPPED-OUT BASES, BASE TRIPLET
Nucleic Acid Sequence:
ChainsA, B: (DG) (DG) (DC) (DC) (DA) (DA) (DT) (DT) (DG) (DG)
Primary Citation:Vlieghe, D., Sponer, J., Van Meervelt, L.
Crystal structure of d(GGCCAATTGG) complexed with DAPI reveals novel binding mode.
Biochemistry , 38, pp. 16443 - 16451, 1999.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.616b = 36.563c = 52.961(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:SODIUM CACODYLATE, MgCl2, SPERMINE, MPD
Reservoir:MPD
Refinement:The structure was refined using the SHELXL-93 program. The R value is 19.2 for 3562 reflections in the resolution range 10.00 to 1.89 Ångstroms .

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 432D

PubMed: 10600105




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