NDB ID: DD0020


Title:CRYSTAL STRUCTURE OF POLYAMIDE DIMER (IMPYHPPYBETADP)2 BOUND TO B-DNA DECAMER CCAGATCTGG
Molecular Description:5'-D(CpCpApGpApTpCpTpGpG)-3'

HYDROXYPYRROLE-IMIDAZOLE-PYRROLE POLYAMIDE
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(DC) (DC) (DA) (DG) (DA) (DT) (DC) (DT) (DG) (DG)
Primary Citation:Kielkopf, C.L., Bremer, R.E., White, S., Szewczyk, J.W., Turner, J.M., Baird, E.E., Dervan, P.B., Rees, D.C.
Structural effects of DNA sequence on T.A recognition by hydroxypyrrole/pyrrole pairs in the minor groove.
J.Mol.Biol. , 295, pp. 557 - 567, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 31
Cell Constants:
a = 34.200b = 34.200c = 46.100(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 23.7 for 2680 reflections in the resolution range 17.0 to 2.27 Ångstroms with I > 0. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1CVX

PubMed: 10623546




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