NDB ID: DD0023


Title:CRYSTAL STRUCTURE OF 5-F-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2
Molecular Description:5'-D(CpGpTpApCpG)-3'
ACRIDINE DERIVATIVE
Structural Features:RH DOUBLE HELIX
Nucleic Acid Sequence:
ChainA:(DC) (DG) (DT) (DA) (DC) (DG)
Primary Citation:Adams, A., Guss, J.M., Collyer, C.A., Denny, W.A., Prakash, A.S., Wakelin, L.P.
Acridinecarboxamide topoisomerase poisons: structural and kinetic studies of the DNA complexes of 5-substituted 9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamides.
Mol.Pharmacol. , 58, pp. 649 - 658, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 64
Cell Constants:
a = 30.140b = 30.140c = 39.400(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the SHELXL-97 program. The R value is 21.4 for 2978 reflections in the resolution range 16.0 to 1.55 Ångstroms with I > 0.0 sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1DL8

PubMed: 10953060




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