NDB ID: DD0030


Title:PSORALEN CROSS-LINKED D(CCGCTAGCGG) FORMS HOLLIDAY JUNCTION
Molecular Description:5'-D(CpCpGpCpTpApGpCpGp
G)-3' CROSSLINKED BY PSORALEN
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA, B: (DC) (DC) (DG) (DC) (DT) (DA) (DG) (DC) (DG) (DG)
Primary Citation:Eichman, B.F., Mooers, B.H., Alberti, M., Hearst, J.E., Ho, P.S.
The crystal structures of psoralen cross-linked DNAs: drug-dependent formation of Holliday junctions.
J.Mol.Biol. , 308, pp. 15 - 26, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 70.674b = 23.769c = 44.339(Ångstroms)
= 90.00 = 130.11 = 90.00(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, SITTING DROP
Drop:sodium cacodylate, MgCl2, MPD
Reservoir:MgCl2, MPD
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 24.5 for 2928 reflections in the resolution range 34.65 to 2.20 Ångstroms with I > 0.0 sigma(I).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1FHY

PubMed: 11302703




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