NDB ID: DD0037


Title:INTERCALATION OF AN 9ACRIDINE-PEPTIDE DRUG IN A DNA DODECAMER
Molecular Description:5'-D(CpGpCpGpApApTpTpCpGpCpG)-3'
ACRIDINE-PEPTIDE DRUG
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B,C,D,E,F,G,H,I,J,K,L:(DC) (DG) (DC) (DG) (DA) (DA) (DT) (DT) (DC) (DG) (DC) (DG)
Protein Sequence:
ChainM: Click here for sequence.
Primary Citation:Malinina, L., Soler-Lopez, M., Aymami, J., Subirana, J.A.
Intercalation of an acridine-peptide drug in an AA/TT base step in the crystal structure of [d(CGCGAATTCGCG)](2) with six duplexes and seven Mg(2+) ions in the asymmetric unit.
Biochemistry , 41, pp. 9341 - 9348, 2002.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 66.471b = 68.365c = 77.362(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the REFMAC 5 program. The R value is 22.0 for 8086 reflections in the resolution range 20.00 to 2.700 Ångstroms .

Biological Unit 1
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Asymmetric Unit

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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)123456

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1G3X

PubMed: 12135355




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