NDB ID: DD0039


Title:ACTINOMYCIN D BINDING TO CGATCGATCG
Molecular Description:5'-D(CGpApTpCpGpAp(BRU)pCpG)-3'
ACTINOMYCIN D
Structural Features:B DOUBLE HELIX, FLIPPED-OUT BASES, OVERHANGING BASES
Nucleic Acid Sequence:
ChainsA,B,C,D:(DC) (DG) (DA) (DT) (DC) (DG) (DA) (BRU) (DC) (DG)
Primary Citation:Robinson, H., Gao, Y.G., Yang, X., Sanishvili, R., Joachimiak, A., Wang, A.H.
Crystallographic analysis of a novel complex of actinomycin D bound to the DNA decamer CGATCGATCG.
Biochemistry , 40, pp. 5587 - 5592, 2001.
Experimental Information:X-RAY DIFFRACTION
Space Group: 43   21   2
Cell Constants:
a = 47.013b = 47.013c = 160.368(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the SHELXL-97 program. The R value is 23.1 for 19747 reflections in the resolution range 10.0 to 1.7 Ångstroms with I > 0.0 sigma(I).

Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing

Biological Units
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1I3W

PubMed: 11341823




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