NDB ID: DD0041
Title:
CRYSTAL STRUCTURE OF THE B-DNA HEXAMER (CGATCG).DAUNOMYCIN COMPLEX CONTAINING A RIBOSE AT THE INTERCALATION SITE
Molecular Description:
5'-D(C)-R(pG)-D(pApTpCpG)-3'
DAUNOMYCIN
Structural Features:
B DOUBLE HELIX
Nucleic Acid Sequence:
Primary Citation:
Shi, K., Pan, B., Sundaralingam, M.
Structure of a B-form DNA/RNA chimera (dC)(rG)d(ATCG) complexed with daunomycin at 1.5 A resolution.
Acta Crystallogr.,Sect.D
,
59
, pp. 1377 - 1383, 2003.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P
4
1
2
1
2
Cell Constants:
a = 28.05
b = 28.05
c = 53.16
(Ångstroms)
= 90.00
= 90.00
= 90.00
(degrees)
Refinement:
The structure was refined using the CNS program. The R value is 19.8 for 2699 reflections in the resolution range 10.00 to 1.50 Ångstroms with Fobs > 2.000 sigma(Fobs).
Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1
Coordinate + Structure Data
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format)
Structure Factors (cif format)
XML |
Complete with coordinates (xml format, GNU compressed(.gz))
XML |
Coordinates only (xml format, GNU compressed(.gz))
XML |
Header only (xml format, GNU compressed(.gz))
Derivative Data
Nucleic Acid Backbone Torsions
Base Pair Parameters
Base Pair Step Parameters
Hydrogen Bonding Classification
Links
The RCSB Protein Data Bank:
1JO2
PubMed:
12876339
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