NDB ID: DD0042


Title:THE CRYSTAL STRUCTURE OF D(GGCCAATTGG) COMPLEXED WITH DISTAMYCIN
Molecular Description:5'-D(GpGpCpCpApApTpTpGpG)-3'
DISTAMYCIN A
Structural Features:B DOUBLE HELIX, OVERHANGING BASES, FLIPPED-OUT BASES, BASE TRIPLET
Nucleic Acid Sequence:
ChainsA,B:(DG) (DG) (DC) (DC) (DA) (DA) (DT) (DT) (DG) (DG)
Primary Citation:Uytterhoeven, K., Sponer, J., Van Meervelt, L.
Two 1 : 1 binding modes for distamycin in the minor groove of d(GGCCAATTGG).
Eur.J.Biochem. , 269, pp. 2868 - 2877, 2002.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 25.289b = 36.439c = 53.047(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the SHELXL-93 program. The R value is 19.7 for 3493 reflections in the resolution range 100.0 to 1.85 Ångstroms with Fobs > 4.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1JTL

PubMed: 12071949




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