NDB ID: DD0050


Title:2.4 ANGSTROM CRYSTAL STRUCTURE OF THE ASYMMETRIC PLATINUM COMPLEX {PT(AMMINE)(CYCLOHEXYLAMINE)}2+ BOUND TO A DODECAMER DNA DUPLEX
Molecular Description:5'-D(CpCpTpCpTpGpGpTpCpTpCpC)-3'

CIS-(AMMINE)(CYCLOHEXYLAMINE)DICHLOROPLATINUM(II)
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,C:(DC) (DC) (DT) (DC) (DT) (DG) (DG) (DT) (DC) (DT) (DC) (DC)
ChainsB,D:(DG) (DG) (DA) (DG) (DA) (DC) (DC) (DA) (DG) (DA) (DG) (DG)
Primary Citation:Silverman, A.P., Bu, W., Cohen, S.M., Lippard, S.J.
2.4-A Crystal Structure of the Asymmetric Platinum Complex {Pt(ammine)(cyclohexylamine)}2+ Bound to a Dodecamer DNA Duplex
J.Biol.Chem. , 277, pp. 49743 - 49749, 2002.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 31.644b = 35.638c = 46.556(Ångstroms)
= 79.53 = 83.02 = 81.36(degrees)
Refinement:The structure was refined using the SHELXL-97 program. The R value is 23.4 for reflections in the resolution range 50.0 to 2.40 Ångstroms with I > 2. sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1LU5

PubMed: 12377787




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