NDB ID: DD0054


Title:THE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN A DISACCHARIDE ANTHRACYCLINE AND THE DNA HEXAMER D(CGATCG) REVEALS TWO DIFFERENT BINDING SITES INVOLVING TWO DNA DUPLEXES
Molecular Description:5'-D(CpGpApTpCpG)-3'
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DA) (DT) (DC) (DG)
Primary Citation:Temperini, C., Messori, L., Orioli, P., Di Bugno, C., Animati, F., Ughetto, G.
The crystal structure of the complex between a disaccharide anthracycline and the DNA hexamer d(CGATCG) reveals two different binding sites involving two DNA duplexes
Nucleic Acids Res. , 31, pp. 1464 - 1469, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 43   21   2
Cell Constants:
a = 37.813b = 37.813c = 63.020(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the NUCLSQ program. The R value is 22.4 for 2321 reflections in the resolution range 8.0 to 2.15 Ångstroms with Fobs > 2.0 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1NAB

PubMed: 12595554




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