NDB ID: DD0058


Title:1.5 A RESOLUTION STRUCTURE OF A SYNTHETIC DNA HAIRPIN WITH A STILBENEDIETHER LINKER
Molecular Description:5'-D(GpTpTpTpTpGp(S02)pCpApApApApC)-3'
Structural Features:DOUBLE HELIX, LOOPS, HAIRPIN LOOP
Nucleic Acid Sequence:
ChainsA,B:(DG) (DT) (DT) (DT) (DT) (DG) (S02) (DC) (DA) (DA) (DA) (DA) (DC)
Primary Citation:Egli, M., Tereshko, V., Mushudov, G.N., Sanishvili, R., Liu, X., Lewis, F.D.
Face-to-face and edge-to-face pi-pi interactions in a synthetic DNA hairpin with a stilbenediether linker
J.Am.Chem.Soc. , 125, pp. 10842 - 10849, 2003.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 29.890b = 41.860c = 51.100(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the REFMAC 5.1.13 program. The R value is 20.4 for 9590 reflections in the resolution range 15.00 to 1.50 Ångstroms with Fobs > 0.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing

Biological Assemblies
Enlarge Biological Assembly 1
Enlarge Biological Assembly 2



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1PUY

PubMed: 12952463




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