NDB ID: DD0061


Title:ROLE OF THE AMINO SUGAR IN DNA BINDING OF DISACCHARIDE ANTHRACYCLINES: CRYSTAL STRUCTURE OF MAR70/D(CGATCG) COMPLEX
Molecular Description:5'-D(CpGpApTpCpG)-3'
4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainA:(DC) (DG) (DA) (DT) (DC) (DG)
Primary Citation:Temperini, C., Cirilli, M., Aschi, M., Ughetto, G.
Role of the amino sugar in DNA binding of disaccharide anthracyclines: crystal structure of the complex MAR70/d(CGATCG).
BIOORG.MED.CHEM. , 13, pp. 1673 - 1679, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 41   21   2
Cell Constants:
a = 28.190b = 28.190c = 53.250(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the SHELXL-97 program. The R value is NaN for reflections in the resolution range 10.00 to 1.20 Ångstroms with Fobs > 4.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1R68

PubMed: 15698785




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