NDB ID: DD0062


Title:9-AMINO-[N-(2-DIMETHYLAMINO)PROPLY]-ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2
Molecular Description:5'-D(CpGpTpApCpG)-3'

9-amino-[N-(2-dimethylamino)proply]-acridine-4-carboxamide
Structural Features:B DOUBLE HELIX, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DT) (DA) (DC) (DG)
Primary Citation:Adams, A., Guss, J.M., Denny, W.A., Wakelin, L.P.
Structure of 9-amino-[N-(2-dimethylamino)propyl]acridine-4-carboxamide bound to d(CGTACG)(2): a comparison of structures of d(CGTACG)(2) complexed with intercalatorsin the presence of cobalt.
Acta Crystallogr.,Sect.D , 60, pp. 823 - 828, 2004.
Experimental Information:X-RAY DIFFRACTION
Space Group: 2
Cell Constants:
a = 28.745b = 52.124c = 40.745(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the SHELXL-97 program. The R value is 22.7 for 4670 reflections in the resolution range 40.00 to 1.55 Ångstroms with I > 0.0 sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1RQY

PubMed: 15103127




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