NDB ID: DD0065


Title:OLIGONUCLEOTID/DRUG COMPLEX
Molecular Description:5'-D(CpGpTpApCpG)-3'

1,5-BIS[3-(DIETHYLAMINO)PROPIONAMIDO]ANTHRACENE-9,10-DIONE
Structural Features:B DOUBLE HELIX, BASE INTERCALATED, FLIPPED-OUT BASE, OVERHANGING BASE
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DT) (DA) (DC) (DG)
Primary Citation:Valls, N., Steiner, R.A., Wright, G., Murshudov, G.N., Subirana, J.A.
Variable role of ions in two drug intercalation complexes of DNA
J.Biol.Inorg.Chem. , 10, pp. 476 - 482, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 2
Cell Constants:
a = 29.056b = 52.856c = 40.084(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the REFMAC 5.1.24 program. The R value is 21.3 for 1984 reflections in the resolution range 25. to 2.00 Ångstroms .

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1XCU

PubMed: 15926069




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