NDB ID: DDF023


Title:FORMALDEHYDE CROSS-LINKS DAUNORUBICIN AND DNA EFFICIENTLY: HPLC AND X-RAY DIFFRACTION STUDIES
Molecular Description:5'-D(CpGpCp(G49)pCpG)-3'
DAUNORUBICIN (DAUNOMYCIN)
Structural Features:RH DOUBLE HELIX
Nucleic Acid Sequence:
ChainA:(DC) (DG) (DC) (G49) (DC) (DG)
Primary Citation:Wang, A.H., Gao, Y.G., Liaw, Y.C., Li, Y.K.
Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-ray diffraction studies.
Biochemistry , 30, pp. 3812 - 3815, 1991.
Experimental Information:X-RAY DIFFRACTION
Space Group: 41   21   2
Cell Constants:
a = 27.943b = 27.943c = 52.243(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the NUCLSQ program. The R value is 18.5 for 2229 reflections in the resolution of 1.500 with Fobs > 3.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1D33

PubMed: 2018756




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