NDB ID: DDF041


Title:INTERACTIONS BETWEEN MORPHOLINYL ANTHRACYCLINES AND DNA: THE CRYSTAL STRUCTURE OF A MORPHOLINO DOXORUBICIN BOUND TO D(CGTACG)
Molecular Description:5'-D(CpGpTpApCpG)-3'

3'-DESAMINO-3'-(2-METHOXY-4-MORPHOLINYL)-DOXORUBICIN
Structural Features:RH DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B:(DC) (DG) (DT) (DA) (DC) (DG)
Primary Citation:Cirilli, M., Bachechi, F., Ughetto, G., Colonna, F.P., Capobianco, M.L.
Interactions between morpholinyl anthracyclines and DNA. The crystal structure of a morpholino doxorubicin bound to d(CGTACG).
J.Mol.Biol. , 230, pp. 878 - 889, 1993.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 18.010b = 18.830c = 26.750(Ångstroms)
= 92.60 = 100.50 = 94.90(degrees)
Refinement:The structure was refined using the NUCLSQ program. The R value is 19.2 for 3588 reflections in the resolution range 10.000 to 1.500 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Unit 1
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 2DES

PubMed: 8478940




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