NDB ID: DDF064


Title:FACTORS AFFECTING SEQUENCE SELECTIVITY ON NOGALAMYCIN INTERCALATION: THE CRYSTAL STRUCTURE OF D(TGTACA)-NOGALAMYCIN
Molecular Description:5'-D(TpGpTpApCpA)-3'
NOGALAMYCIN
Structural Features:B DOUBLE HELIX
Nucleic Acid Sequence:
ChainsA,B,C,D:(DT) (DG) (DT) (DA) (DC) (DA)
Primary Citation:Smith, C.K., Brannigan, J.A., Moore, M.H.
Factors affecting DNA sequence selectivity of nogalamycin intercalation: the crystal structure of d(TGTACA)2-nogalamycin2.
J.Mol.Biol. , 263, pp. 237 - 258, 1996.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   21
Cell Constants:
a = 26.300b = 51.980c = 67.080(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the SHELXL-93 program. The R value is 18.8 for 12358 reflections in the resolution range 10.690 to 1.580 Ångstroms with Fobs > 0.000 sigma(Fobs).

Biological Unit 1
Other Views
Asymmetric Unit
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)12

Structure Factors (cif format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 258D

PubMed: 8913304




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