NDB ID: DDF073


Title:1.3 A STRUCTURE DETERMINATION OF THE D(CG(5-BRU)ACG)2/6-BROMO-9-AMINO-DACA COMPLEX
Molecular Description:5'-D(CpGp(BRU)pApCpG)-3'
ACRIDINE-4-CARBOXAMIDE DERIVATIVE
Structural Features:RH DOUBLE HELIX
Nucleic Acid Sequence:
ChainA:(DC) (DG) (BRU) (DA) (DC) (DG)
Primary Citation:Todd, A.K., Adams, A., Thorpe, J.H., Denny, W.A., Wakelin, L.P., Cardin, C.J.
Major groove binding and 'DNA-induced' fit in the intercalation of a derivative of the mixed topoisomerase I/II poison N-(2-(dimethylamino)ethyl)acridine-4-carboxamide (DACA) into DNA: X-ray structure complexed to d(CG(5-BrU)ACG)2 at 1.3-A resolution.
J.Med.Chem. , 42, pp. 536 - 540, 1999.
Experimental Information:X-RAY DIFFRACTION
Space Group: 64
Cell Constants:
a = 30.110b = 30.110c = 39.560(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the SHELXL-96 program. The R value is 18.5 for reflections in the resolution range 8.0 to 1.30 Ångstroms .

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Coordinate + Structure Data

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Biological Unit coordinates (pdb format)

Structure Factors (cif format)

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Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 366D

PubMed: 10052960




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