NDB ID: DDF078
Title:
FORMATION OF A NEW COMPOUND IN THE CRYSTAL STRUCTURE OF CYANOMORPHOLINODOXORUBICIN COMPLEXED WITH D(CGATCG)
Molecular Description:
5'-D(CpGpApTpCpG)-3'
N-(2-HYDROXYETHYL)DOXORUBICIN
Structural Features:
RH DOUBLE HELIX
Nucleic Acid Sequence:
Chain
A:
(DC) (DG) (DA) (DT) (DC) (DG)
Primary Citation:
Ettorre, A., Cirilli, M., Ughetto, G.
Degradation of the morpholino ring in the crystal structure of cyanomorpholinodoxorubicin complexed with d(CGATCG).
Eur.J.Biochem.
,
258
, pp. 350 - 354, 1998.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P
4
1
2
1
2
Cell Constants:
a = 28.130
b = 28.130
c = 53.560
(Ångstroms)
= 90.00
= 90.00
= 90.00
(degrees)
Refinement:
The structure was refined using the NUCLSQ program. The R value is 20.7 for 1212 reflections in the resolution range 8.000 to 1.600 Ångstroms with Fobs > 2.000 sigma(Fobs).
Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
Enlarge Biological Assembly 1
Coordinate + Structure Data
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format)
Structure Factors (cif format)
XML |
Complete with coordinates (xml format, GNU compressed(.gz))
XML |
Coordinates only (xml format, GNU compressed(.gz))
XML |
Header only (xml format, GNU compressed(.gz))
Derivative Data
Nucleic Acid Backbone Torsions
Base Pair Parameters
Base Pair Step Parameters
Hydrogen Bonding Classification
Links
The RCSB Protein Data Bank:
385D
PubMed:
9874199
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