NDB ID: DR0003
Title:
5'-D(*TP*TP*CP*TP*TP*(BRO)CP*TP*TP*C)-3', 5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3'
Molecular Description:
5'-D(TpTpCpTpTp(CBR)pTpTpC)-3'
5'-R(GpApApGpApApGpApA)-3'
Structural Features:
A DOUBLE HELIX
Nucleic Acid Sequence:
Chain
A:
(DT) (DT) (DC) (DT) (DT) (CBR) (DT) (DT) (DC)
Chain
B:
G A A G A A G A A
Primary Citation:
Xiong, Y., Sundaralingam, M.
Crystal structure and conformation of a DNA-RNA hybrid duplex with a polypurine RNA strand: d(TTCTTBr5CTTC)-r(GAAGAAGAA).
Structure
,
6
, pp. 1493 - 1501, 1998.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P
6
1
Cell Constants:
a = 48.080
b = 48.080
c = 42.880
(Ångstroms)
= 90.00
= 90.00
= 120.00
(degrees)
Refinement:
The structure was refined using the X-PLOR 3.851 program. The R value is 20.1 for 4687 reflections in the resolution range 10.00 to 1.80 Ångstroms with Fobs > 2.000 sigma(Fobs).
Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1
Coordinate + Structure Data
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Assembly coordinates (pdb format)
XML |
Complete with coordinates (xml format, GNU compressed(.gz))
XML |
Coordinates only (xml format, GNU compressed(.gz))
XML |
Header only (xml format, GNU compressed(.gz))
Derivative Data
Nucleic Acid Backbone Torsions
Base Pair Parameters
Base Pair Step Parameters
Hydrogen Bonding Classification
Links
The RCSB Protein Data Bank:
421D
PubMed:
9862803
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