NDB ID: DR0003


Title:5'-D(*TP*TP*CP*TP*TP*(BRO)CP*TP*TP*C)-3', 5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3'
Molecular Description:5'-D(TpTpCpTpTp(CBR)pTpTpC)-3'
5'-R(GpApApGpApApGpApA)-3'
Structural Features:A DOUBLE HELIX
Nucleic Acid Sequence:
ChainA:(DT) (DT) (DC) (DT) (DT) (CBR) (DT) (DT) (DC)
ChainB:G A A G A A G A A
Primary Citation:Xiong, Y., Sundaralingam, M.
Crystal structure and conformation of a DNA-RNA hybrid duplex with a polypurine RNA strand: d(TTCTTBr5CTTC)-r(GAAGAAGAA).
Structure , 6, pp. 1493 - 1501, 1998.
Experimental Information:X-RAY DIFFRACTION
Space Group: 61
Cell Constants:
a = 48.080b = 48.080c = 42.880(Ångstroms)
= 90.00 = 90.00 = 120.00(degrees)
Refinement:The structure was refined using the X-PLOR 3.851 program. The R value is 20.1 for 4687 reflections in the resolution range 10.00 to 1.80 Ångstroms with Fobs > 2.000 sigma(Fobs).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 421D

PubMed: 9862803




ndbadmin@ndbserver.rutgers.edu
©1995-2010 The Nucleic Acid Database Project
Rutgers, The State University of New Jersey