NDB ID: DR0005


Title:CRYSTAL STRUCTURE OF A BIOTIN-BINDING RNA PSEUDOKNOT
Molecular Description:BIOTIN-BINDING RNA PSEUDOKNOT
BIOTIN
Structural Features:LOOP, INTERNAL LOOP, HAIRPIN LOOP, BASE TRIPLET
Nucleic Acid Sequence:
ChainA: A C C G U C A G A G G A C A C G G U U
ChainB: A A A A A G U C C U C
Primary Citation:Nix, J., Sussman, D., Wilson, C.
The 1.3 A crystal structure of a biotin-binding pseudoknot and the basis for RNA molecular recognition.
J.Mol.Biol. , 296, pp. 1235 - 1244, 2000.
Experimental Information:X-RAY DIFFRACTION
Space Group: 1
Cell Constants:
a = 47.59b = 30.96c = 62.11(Ångstroms)
= 90 = 111.88 = 90(degrees)
Crystallization Conditions:
Method:VAPOR DIFFUSION, HANGING DROP
Drop:POTASIUM HEPES, MgCl2, KCl, BIOTIN, SPERMINE, MPD
Reservoir:MPD
Refinement:The structure was refined using the CNS program. The R value is 19.9 for 20852 reflections in the resolution range 17.18 to 1.30 Ångstroms with I > 1.0 sigma(I).

Biological Unit 1
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RNA View
RNAML File
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Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Unit coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The Protein Data Bank: 1F27

PubMed: 10698630




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