NDB ID: DR0008
Title:
CRYSTAL STRUCTURE OF GENETICIN BOUND TO THE EUBACTERIAL 16S RRNA A SITE
Molecular Description:
5'-R(CpGpCpGpUpCpApCpApCpCpGpGpUpGpApAp
GpUpCpGpC)-3'
geneticin
Structural Features:
A DOUBLE HELIX, BULGES
Nucleic Acid Sequence:
Chain
s
A, B:
C G C G U C A C A C C G G U G A A G U C G C
Primary Citation:
Vicens, Q., Westhof, E.
Crystal structure of geneticin bound to a bacterial 16S ribosomal RNA A site oligonucleotide
J.Mol.Biol.
,
326
, pp. 1175 - 1188, 2003.
Experimental Information:
X-RAY DIFFRACTION
Space Group:
P
1
2
1
1
Cell Constants:
a = 46.200
b = 33.180
c = 51.740
(Ångstroms)
= 90.00
= 104.13
= 90.00
(degrees)
Crystallization Conditions:
Method:
VAPOR DIFFUSION, HANGING DROP
Refinement:
The structure was refined using the CNS 1.1 program. The R value is 22.4 for 5334 reflections in the resolution range 22.61 to 2.40 Ångstroms with Fobs > 1.5 sigma(Fobs).
Biological Unit 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Unit 1
Coordinate + Structure Data
Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))
Asymmetric Unit coordinates (cif format, Unix compressed(.gz))
Biological Unit coordinates (pdb format)
Structure Factors (cif format)
XML |
Complete with coordinates (xml format, GNU compressed(.gz))
XML |
Coordinates only (xml format, GNU compressed(.gz))
XML |
Header only (xml format, GNU compressed(.gz))
Derivative Data
Nucleic Acid Backbone Torsions
Base Pair Parameters
Base Pair Step Parameters
Hydrogen Bonding Classification
Links
The Protein Data Bank:
1MWL
PubMed:
12589761
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©1995-2007 The Nucleic Acid Database Project
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