NDB ID: DR0011


Title:CRYSTAL STRUCTURE OF APRAMYCIN BOUND TO A RIBOSOMAL RNA A SITE OLIGONUCLEOTIDE
Molecular Description:RNA/APRAMYCIN
Structural Features:A DOUBLE HELIX, BULGES, OVERHANGING BASES, FLIPPED-OUT BASES
Nucleic Acid Sequence:
ChainsA,B:U U G C G U C A C A C C G G U G A A G U C G C
Primary Citation:Han, Q., Zhao, Q., Fish, S., Simonsen, K.B., Vourloumis, D., Froelich, J.M., Wall, D., Hermann, T.
Molecular recognition by glycoside pseudo base pairs and triples in an apramycin-RNA complex.
Angew.Chem.Int.Ed.Engl. , 44, pp. 2694 - 2700, 2005.
Experimental Information:X-RAY DIFFRACTION
Space Group: 21   21   2
Cell Constants:
a = 92.250b = 30.900c = 45.810(Ångstroms)
= 90.00 = 90.00 = 90.00(degrees)
Refinement:The structure was refined using the CNS program. The R value is 24.6 for 3712 reflections in the resolution range 8.0 to 2.7 Ångstroms with I > 1.5 sigma(I).

Biological Assembly 1
Other Views
Asymmetric Unit
Crystal Packing
RNA View
RNAML File
Enlarge Biological Assembly 1



Coordinate + Structure Data

Asymmetric Unit coordinates (pdb format, Unix compressed(.gz))

Asymmetric Unit coordinates (cif format, Unix compressed(.gz))

Biological Assembly coordinates (pdb format)

XML | Complete with coordinates (xml format, GNU compressed(.gz))
XML | Coordinates only (xml format, GNU compressed(.gz))
XML | Header only (xml format, GNU compressed(.gz))

Derivative Data

Nucleic Acid Backbone Torsions

Base Pair Parameters

Base Pair Step Parameters

Hydrogen Bonding Classification

Links

The RCSB Protein Data Bank: 1YRJ

PubMed: 15849690




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